Sidho-Kanho-Birsha University

Syllabus & Course Curriculam

Syllabus (BOTANY)

Course Type: MAJ-4

Semester: 4

Course Code: BBOTMAJ04C

Course Title: Molecular Biology, Genetics and Plant Breeding

(L-P-Tu): 4-2-0

Credit: 6

Practical/Theory: Combined

Course Objective: 1. Understanding the mechanism and concepts of life process at molecular level. 2. Knowledge about nucleic acids, DNA organization, DNA replication, genetic code and transcription and translation. 3. To understand the processing and modification of RNA

Learning Outcome: After the completion of the course the students will be able to: 1. Understanding the mechanism and concepts of life process at molecular level through central dogma concept. 2.  Understand nucleic acids, organization of DNA in prokaryotes and Eukaryot

(Theory, Credit 4)

Unit

Topic

No. of Lectures/Hrs

1

Nucleic acids: DNA as the carrier of genetic information (Griffith’s, Hershey & Chase, McLeod & McCarty experiment).

2

2

The Structures of DNA and RNA/Genetic Material: DNA Structure: Miescher to Watson and Crick- historic perspective, DNA structure, Salient
features of double helix, Types of DNA, denaturation and renaturation, cot curves; Organization of DNA- Prokaryotes, Viruses, Eukaryotes. RNA
Structure. Organelle DNA -- mitochondria and chloroplast DNA. The Nucleosome. Chromatin structure- Euchromatin, Heterochromatin- Constitutive and Facultative heterochromatin.

4

3

The replication of DNA: Chemistry of DNA synthesis (Kornberg’s discovery); General principles – bidirectional, semiconservative and semi discontinuous replication, RNA priming; rolling circle and θ (theta) mode of replication, replication of linear ds-DNA,
replication of the 5’end of linear chromosome; Enzymes involved in DNA replication.

5

4

Transcription: Transcription in prokaryotes and eukaryotes. Principles of transcriptional regulation; Prokaryotes: lac operon Eukaryotes: transcription factors, heat shock proteins, Gene silencing.

4

5

Processing and modification of RNA: Split genes-concept of introns and exons, spliceosome machinery, splicing pathways, group I and group II intron splicing, alternative splicing, eukaryotic mRNA processing (5’ cap, 3’ poly A tail); Ribozymes; RNA editing.

3

6

Central dogma and genetic code: Genetic code (deciphering & salient features).

2

7

Translation: Ribosome structure and assembly, mRNA; Charging of tRNA, aminoacyl tRNA synthetases; Various steps in protein synthesis, proteins involved in initiation, elongation and termination of polypeptides; Fidelity of translation; Inhibitors of protein synthesis.

4

8

Mendelian genetics and its extension:
Principles of inheritance; Chromosome theory of inheritance; Autosomes and sex chromosomes; Probability and pedigree analysis; Incomplete dominance and codominance; Multiple alleles, Lethal alleles, Epistasis, Pleiotropy, Recessive and Dominant traits, Penetrance and Expressivity, Polygenic inheritance.

5

9

Extrachromosomal Inheritance: Chloroplast mutation: Variegation in Four o’clock plant; Mitochondrial mutations in yeast; Maternal effects-shell coiling in snail; Infective heredity- Kappa particles in Paramecium.

3

10

Linkage, crossing over and chromosome mapping: Linkage and crossing over-Cytological and molecular basis of crossing over; Recombination frequency, two
factor and three factor crosses; Interference and coincidence; Numericals based on gene mapping.

3

11

Variation in chromosome number and structure: Deletion, Duplication, Inversion, Translocation, Position effect, Euploidy and Aneuploidy.

3

12

Gene mutations: Types of mutations; Molecular basis of Mutations; Mutagens – physical and chemical (Base analogs, deaminating, and intercalating agents); Role of Transposons in mutation.DNA repair mechanisms.

3

13

Fine structure of gene: Classical vs molecular concepts of gene; Cis-Trans complementation test for functional allelism; Structure of Phage T4, rII Locus.

3

14

Population and Evolutionary Genetics: Allele frequencies, Genotype frequencies, Hardy-Weinberg Law, role of natural selection, mutation, genetic drift.

4

15

Plant Breeding: Introduction and objectives. Modes of reproduction in crop plants. Methods of crop improvement: Acclimatization; Selection methods: For self-pollinated, cross pollinated and vegetatively propagated plants; Hybridization: For self, cross and vegetatively propagated plants – Procedure, advantages and limitations. Role of mutations; Polyploidy; Distant hybridization; Heterosis: Theories and Applications.

12

Practical (Credits -2, 60 Hrs)

  1. Study of DNA replication mechanisms through photographs (Rolling circle, Theta replication and semi-discontinuous replication).
  2. Study of structures of prokaryotic RNA polymerase and eukaryotic RNA polymerase II through photographs.
  3. Photographs establishing nucleic acid as genetic material (Messelson and Stahl’s, Avery et al, Griffith’s, Hershey & Chase’s and Fraenkel & Conrat’s experiments).
  4. Study of the following through photographs: Assembly of Spliceosome machinery; Splicing mechanism in group I & group II introns; Ribozyme and Alternative splicing.
  5. Isolation of genomic DNA from plant sample (demonstration through youtube video).
  6. Meiosis through temporary squash preparation with special reference to Allium sp.
  7. Mendel’s laws through seed ratios. Laboratory exercises in probability and chi-square.
  8. Chromosome mapping using point test cross data.
  9. Idea about pre-treatment, fixation, staining and smear preparation.
  10. Incomplete dominance and gene interaction through seed ratios (9:7, 9:6:1, 13:3, 15:1, 12:3:1, 9:3:4).
  11. Photograhs/Permanent Slides showing Translocation Ring, Laggards and Inversion Bridge.

Reading References:

1. Watson J.D., Baker, T.A., Bell, S.P., Gann, A., Levine, M., Losick, R. (2007). Molecular Biology of the Gene, Pearson Benjamin Cummings, CSHL Press, New York, U.S.A. 6th edition.
2. Snustad, D.P. and Simmons, M.J. (2010). Principles of Genetics. John Wiley and Sons Inc., U.S.A. 5th edition.
3. Klug, W.S., Cummings, M.R., Spencer, C.A. (2009). Concepts of Genetics. Benjaminn Cummings. U.S.A. 9th edition.
4. Russell, P. J. (2010). i-Genetics- A Molecular Approach. Benjamin Cummings, U.S.A. 3rd edition.
5. Griffiths, A.J.F., Wessler, S.R., Carroll, S.B., Doebley, J. (2010). Introduction to Genetic Analysis. W. H. Freeman and Co., U.S.A. 10th edition.

6. Gardner, E.J., Simmons, M.J., Snustad, D.P. (1991). Principles of Genetics, John Wiley & sons, India. 8th edition.

7. Snustad, D.P. and Simmons, M.J. (2010). Principles of Genetics, John Wiley & Sons Inc., India. 5th edition.

8. Klug, W.S., Cummings, M.R., Spencer, C.A. (2009). Concepts of Genetics. Benjamin Cummings, U.S.A. 9th edition.
9. Griffiths, A.J.F., Wessler, S.R., Carroll, S.B., Doebley, J. (2010). Introduction to Genetic Analysis. W. H. Freeman and Co., U.S.A. 10th edition.

10. Singh, B.D. (2005). Plant Breeding: Principles and Methods. Kalyani Publishers. 7th edition.
11. Chaudhari, H.K. (1984). Elementary Principles of Plant Breeding. Oxford – IBH.2nd edition.
12. Acquaah, G. (2007). Principles of Plant Genetics & Breeding. Blackwell Publishing.

Basic Features

Undergraduate degree programmes of either 3 or 4-year duration, with multiple entry and exit points and re-entry options, with appropriate certifications such as: 

Note: The eligibility condition of doing the UG degree (Honours with Research) is- minimum75% marks to be obtained in the first six semesters.

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